3D structure

PDB id
6OPE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGAAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
6OPE|1|RA|A|1045, 6OPE|1|RA|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OPE_367 not in the Motif Atlas
Homologous match to IL_9DFE_041
Geometric discrepancy: 0.3797
The information below is about IL_9DFE_041
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

6OPE|1|RA|C|1043
6OPE|1|RA|G|1044
6OPE|1|RA|A|1045
6OPE|1|RA|A|1046
6OPE|1|RA|G|1047
6OPE|1|RA|A|1048
6OPE|1|RA|C|1049
6OPE|1|RA|A|1050
6OPE|1|RA|G|1051
*
6OPE|1|RA|U|1108
6OPE|1|RA|C|1109
6OPE|1|RA|G|1110
6OPE|1|RA|A|1111
6OPE|1|RA|G|1112

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RH
50S ribosomal protein L6

Coloring options:


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