IL_6OPE_367

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

6OPE|1|RA|A|1045, 6OPE|1|RA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_367 not in the Motif Atlas

Homologous match to IL_9DFE_041

Geometric discrepancy: 0.3797

The information below is about IL_9DFE_041

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6OPE|1|RA|C|1043
6OPE|1|RA|G|1044
6OPE|1|RA|A|1045
6OPE|1|RA|A|1046
6OPE|1|RA|G|1047
6OPE|1|RA|A|1048
6OPE|1|RA|C|1049
6OPE|1|RA|A|1050
6OPE|1|RA|G|1051
*
6OPE|1|RA|U|1108
6OPE|1|RA|C|1109
6OPE|1|RA|G|1110
6OPE|1|RA|A|1111
6OPE|1|RA|G|1112

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RH

50S ribosomal protein L6