IL_9DFE_041

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

9DFE|1|1A|A|1045, 9DFE|1|1A|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9DFE|1|1A|C|1043
9DFE|1|1A|G|1044
9DFE|1|1A|A|1045
9DFE|1|1A|A|1046
9DFE|1|1A|G|1047
9DFE|1|1A|A|1048
9DFE|1|1A|C|1049
9DFE|1|1A|A|1050
9DFE|1|1A|G|1051
*
9DFE|1|1A|U|1108
9DFE|1|1A|C|1109
9DFE|1|1A|G|1110
9DFE|1|1A|A|1111
9DFE|1|1A|G|1112

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1H

50S ribosomal protein L6