IL_6ORD_009

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

6ORD|1|QA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_009 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1122

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

6ORD|1|QA|G|148
6ORD|1|QA|A|149
6ORD|1|QA|C|150
6ORD|1|QA|A|151
6ORD|1|QA|A|152
6ORD|1|QA|C|153
*
6ORD|1|QA|G|168
6ORD|1|QA|C|169
6ORD|1|QA|U|170
6ORD|1|QA|A|171
6ORD|1|QA|A|172
6ORD|1|QA|U|173
6ORD|1|QA|C|174

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20