3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
G(PSU)GCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
6ORD|1|QA|A|532, 6ORD|1|QA|U|534
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ORD_021 not in the Motif Atlas
Homologous match to IL_4LFB_021
Geometric discrepancy: 0.086
The information below is about IL_4LFB_021
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6ORD|1|QA|G|515
6ORD|1|QA|PSU|516
6ORD|1|QA|G|517
6ORD|1|QA|C|518
6ORD|1|QA|C|519
6ORD|1|QA|A|520
6ORD|1|QA|G|521
*
6ORD|1|QA|C|528
6ORD|1|QA|G|529
6ORD|1|QA|G|530
6ORD|1|QA|U|531
6ORD|1|QA|A|532
6ORD|1|QA|A|533
6ORD|1|QA|U|534
6ORD|1|QA|A|535
6ORD|1|QA|C|536

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QC
30S ribosomal protein S3
Chain QD
30S ribosomal protein S4
Chain QL
30S ribosomal protein S12
Chain QX
mRNA
Chain QY
Transfer RNA; tRNA

Coloring options:


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