3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ORD_034 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.0918
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

6ORD|1|QA|G|887
6ORD|1|QA|G|888
6ORD|1|QA|A|889
6ORD|1|QA|G|890
6ORD|1|QA|U|891
6ORD|1|QA|A|892
6ORD|1|QA|C|893
6ORD|1|QA|G|894
*
6ORD|1|QA|U|905
6ORD|1|QA|G|906
6ORD|1|QA|A|907
6ORD|1|QA|A|908
6ORD|1|QA|A|909
6ORD|1|QA|C|910

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QL
30S ribosomal protein S12
Chain QQ
30S ribosomal protein S17
Chain RA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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