IL_6ORD_050

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

6ORD|1|QA|U|1257, 6ORD|1|QA|U|1278, 6ORD|1|QA|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_050 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1761

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6ORD|1|QA|G|1255
6ORD|1|QA|A|1256
6ORD|1|QA|U|1257
6ORD|1|QA|G|1258
*
6ORD|1|QA|C|1277
6ORD|1|QA|U|1278
6ORD|1|QA|A|1279
6ORD|1|QA|A|1280
6ORD|1|QA|U|1281
6ORD|1|QA|C|1282

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QJ

30S ribosomal protein S10

Chain QN

30S ribosomal protein S14 type Z