3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAAC*GAGUGAAAUAGAGC
Length
18 nucleotides
Bulged bases
6ORD|1|RA|U|504, 6ORD|1|RA|G|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ORD_074 not in the Motif Atlas
Geometric match to IL_7RQB_014
Geometric discrepancy: 0.0606
The information below is about IL_7RQB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_60992.6
Basepair signature
cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
Number of instances in this motif group
6

Unit IDs

6ORD|1|RA|G|481
6ORD|1|RA|A|482
6ORD|1|RA|A|483
6ORD|1|RA|C|484
*
6ORD|1|RA|G|496
6ORD|1|RA|A|497
6ORD|1|RA|G|498
6ORD|1|RA|U|499
6ORD|1|RA|G|500
6ORD|1|RA|A|501
6ORD|1|RA|A|502
6ORD|1|RA|A|503
6ORD|1|RA|U|504
6ORD|1|RA|A|505
6ORD|1|RA|G|506
6ORD|1|RA|A|507
6ORD|1|RA|G|508
6ORD|1|RA|C|509

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RW
50S ribosomal protein L22
Chain RY
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1685 s
Application loaded.