IL_6ORD_078

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6ORD|1|RA|G|801, 6ORD|1|RA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_078 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0645

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6ORD|1|RA|G|674
6ORD|1|RA|A|675
6ORD|1|RA|A|676
6ORD|1|RA|A|677
6ORD|1|RA|C|678
*
6ORD|1|RA|G|799
6ORD|1|RA|A|800
6ORD|1|RA|G|801
6ORD|1|RA|A|802
6ORD|1|RA|U|803
6ORD|1|RA|A|804
6ORD|1|RA|G|805
6ORD|1|RA|C|806

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RP

50S ribosomal protein L15