3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ORD_084 not in the Motif Atlas
Homologous match to IL_7RQB_024
Geometric discrepancy: 0.0859
The information below is about IL_7RQB_024
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_92001.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
10

Unit IDs

6ORD|1|RA|C|837
6ORD|1|RA|C|838
*
6ORD|1|RA|G|940
6ORD|1|RA|A|941
6ORD|1|RA|G|942

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R8
50S ribosomal protein L35
Chain RP
50S ribosomal protein L15

Coloring options:


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