IL_6ORD_111

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

6ORD|1|RA|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_111 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.0623

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6ORD|1|RA|C|1351
6ORD|1|RA|U|1352
6ORD|1|RA|A|1353
6ORD|1|RA|A|1354
6ORD|1|RA|G|1355
*
6ORD|1|RA|C|1376
6ORD|1|RA|G|1377
6ORD|1|RA|A|1378
6ORD|1|RA|A|1379
6ORD|1|RA|G|1380

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RD

50S ribosomal protein L2