IL_6ORD_122

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

6ORD|1|RA|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_122 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.0792

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6ORD|1|RA|G|1526
6ORD|1|RA|G|1527
6ORD|1|RA|A|1528|||A
6ORD|1|RA|A|1528|||B
6ORD|1|RA|G|1529
*
6ORD|1|RA|U|1540
6ORD|1|RA|G|1541
6ORD|1|RA|A|1542
6ORD|1|RA|C|1543
6ORD|1|RA|A|1544
6ORD|1|RA|A|1545
6ORD|1|RA|C|1546

Current chains

Chain RA

23S rRNA

Nearby chains