IL_6ORD_133

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_133 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.0936

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6ORD|1|RA|U|1851
6ORD|1|RA|C|1852
6ORD|1|RA|A|1853
6ORD|1|RA|A|1854
6ORD|1|RA|G|1855
*
6ORD|1|RA|C|1887
6ORD|1|RA|G|1888
6ORD|1|RA|A|1889
6ORD|1|RA|A|1890
6ORD|1|RA|G|1891

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28