IL_6ORD_185

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6ORD|1|XA|U|244, 6ORD|1|XA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_185 not in the Motif Atlas

Homologous match to IL_6CZR_123

Geometric discrepancy: 0.0881

The information below is about IL_6CZR_123

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.2

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

6ORD|1|XA|C|242
6ORD|1|XA|A|243
6ORD|1|XA|U|244
6ORD|1|XA|C|245
6ORD|1|XA|A|246
6ORD|1|XA|G|247
*
6ORD|1|XA|C|277
6ORD|1|XA|G|278
6ORD|1|XA|A|279
6ORD|1|XA|C|280
6ORD|1|XA|G|281
6ORD|1|XA|A|282
6ORD|1|XA|C|283
6ORD|1|XA|G|284

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17