IL_6ORD_195

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6ORD|1|XA|A|532, 6ORD|1|XA|U|534, 6ORD|1|XA|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_195 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.0816

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6ORD|1|XA|G|515
6ORD|1|XA|PSU|516
6ORD|1|XA|G|517
6ORD|1|XA|C|518
6ORD|1|XA|C|519
6ORD|1|XA|A|520
6ORD|1|XA|G|521
*
6ORD|1|XA|C|528
6ORD|1|XA|G|529
6ORD|1|XA|G|530
6ORD|1|XA|U|531
6ORD|1|XA|A|532
6ORD|1|XA|A|533
6ORD|1|XA|U|534
6ORD|1|XA|A|535
6ORD|1|XA|C|536

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XC

30S ribosomal protein S3

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12

Chain XX

mRNA

Chain XY

Transfer RNA; tRNA