IL_6ORD_216

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

6ORD|1|XA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_216 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.0975

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

6ORD|1|XA|U|1052
6ORD|1|XA|G|1053
6ORD|1|XA|C|1054
6ORD|1|XA|A|1055
6ORD|1|XA|U|1056
*
6ORD|1|XA|A|1204
6ORD|1|XA|U|1205
6ORD|1|XA|G|1206

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XC

30S ribosomal protein S3

Chain XJ

30S ribosomal protein S10

Chain XN

30S ribosomal protein S14 type Z

Chain XX

mRNA

Chain XY

Transfer RNA; tRNA