IL_6ORD_264

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_264 not in the Motif Atlas

Geometric match to IL_7RQB_032

Geometric discrepancy: 0.1595

The information below is about IL_7RQB_032

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_80097.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6ORD|1|YA|U|877
6ORD|1|YA|A|878
6ORD|1|YA|G|879
*
6ORD|1|YA|C|898
6ORD|1|YA|A|899

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XY

Transfer RNA; tRNA

Chain YQ

50S ribosomal protein L16