IL_6ORD_351

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

G(4OC)C(5MC)*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_351 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.082

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6ORD|1|QA|G|1401
6ORD|1|QA|4OC|1402
6ORD|1|QA|C|1403
6ORD|1|QA|5MC|1404
*
6ORD|1|QA|G|1497
6ORD|1|QA|UR3|1498
6ORD|1|QA|A|1499
6ORD|1|QA|A|1500
6ORD|1|QA|C|1501

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QV

Transfer RNA; tRNA

Chain QX

mRNA

Chain RA

Large subunit ribosomal RNA; LSU rRNA