3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGCUGAC*GGUGGAG
Length
14 nucleotides
Bulged bases
6ORD|1|RA|G|932
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ORD_354 not in the Motif Atlas
Homologous match to IL_9DFE_024
Geometric discrepancy: 0.0893
The information below is about IL_9DFE_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_68243.1
Basepair signature
cWW-L-cWW-cWW-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

6ORD|1|RA|C|844
6ORD|1|RA|G|845
6ORD|1|RA|C|846
6ORD|1|RA|U|847
6ORD|1|RA|G|848
6ORD|1|RA|A|849
6ORD|1|RA|C|850
*
6ORD|1|RA|G|927
6ORD|1|RA|G|928
6ORD|1|RA|U|930
6ORD|1|RA|G|931
6ORD|1|RA|G|932
6ORD|1|RA|A|933
6ORD|1|RA|G|934

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R3
50S ribosomal protein L30

Coloring options:


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