IL_6ORL_030

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAAGG*CCAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORL_030 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.385

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6ORL|1|1|G|875
6ORL|1|1|C|876
6ORL|1|1|A|877
6ORL|1|1|A|878
6ORL|1|1|G|879
6ORL|1|1|G|880
*
6ORL|1|1|C|897
6ORL|1|1|C|898
6ORL|1|1|A|899
6ORL|1|1|A|900
6ORL|1|1|C|901
6ORL|1|1|C|902

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16