IL_6ORL_042

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6ORL|1|1|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORL_042 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1244

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6ORL|1|1|C|1208
6ORL|1|1|U|1209
6ORL|1|1|G|1210
6ORL|1|1|C|1211
6ORL|1|1|G|1212
6ORL|1|1|A|1213
6ORL|1|1|A|1214
6ORL|1|1|G|1215
*
6ORL|1|1|U|1234
6ORL|1|1|G|1235
6ORL|1|1|G|1236
6ORL|1|1|A|1237
6ORL|1|1|G|1238

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20