IL_6ORL_063

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORL_063 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.2069

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6ORL|1|1|U|1720
6ORL|1|1|G|1721
6ORL|1|1|A|1722
6ORL|1|1|G|1723
6ORL|1|1|G|1724
*
6ORL|1|1|U|1736
6ORL|1|1|G|1737
6ORL|1|1|G|1738
6ORL|1|1|A|1739
6ORL|1|1|G|1740

Current chains

Chain 1

23S ribosomal RNA

Nearby chains