IL_6ORL_110

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACGG*CGAGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORL_110 not in the Motif Atlas

Geometric match to IL_1U6B_004

Geometric discrepancy: 0.3784

The information below is about IL_1U6B_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20358.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ORL|1|2|A|66
6ORL|1|2|C|67
6ORL|1|2|G|68
6ORL|1|2|G|69
*
6ORL|1|2|C|99
6ORL|1|2|G|100
6ORL|1|2|A|101
6ORL|1|2|G|102
6ORL|1|2|U|103

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20