IL_6ORL_117

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

6ORL|1|2|U|244, 6ORL|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORL_117 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1481

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6ORL|1|2|G|242
6ORL|1|2|A|243
6ORL|1|2|U|244
6ORL|1|2|U|245
6ORL|1|2|A|246
6ORL|1|2|G|247
*
6ORL|1|2|C|277
6ORL|1|2|G|278
6ORL|1|2|A|279
6ORL|1|2|C|280
6ORL|1|2|G|281
6ORL|1|2|A|282
6ORL|1|2|U|283
6ORL|1|2|C|284

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain v

30S ribosomal protein S17