IL_6ORL_140

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORL_140 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1032

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6ORL|1|2|G|887
6ORL|1|2|G|888
6ORL|1|2|A|889
6ORL|1|2|G|890
6ORL|1|2|U|891
6ORL|1|2|A|892
6ORL|1|2|C|893
6ORL|1|2|G|894
*
6ORL|1|2|U|905
6ORL|1|2|A|906
6ORL|1|2|A|907
6ORL|1|2|A|908
6ORL|1|2|A|909
6ORL|1|2|C|910

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12