IL_6ORL_143

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

6ORL|1|2|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORL_143 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.3153

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6ORL|1|2|G|933
6ORL|1|2|C|934
6ORL|1|2|A|935
*
6ORL|1|2|U|1380
6ORL|1|2|U|1381
6ORL|1|2|C|1382
6ORL|1|2|C|1383
6ORL|1|2|C|1384

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9