IL_6ORL_158

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UACAAAG*CAUAAAG

Length

14 nucleotides

Bulged bases

6ORL|1|2|U|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORL_158 not in the Motif Atlas

Homologous match to IL_5J7L_054

Geometric discrepancy: 0.2166

The information below is about IL_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09129.2

Basepair signature

cWW-L-R-tWH-L-R-L-tWW-cWW

Number of instances in this motif group

2

Unit IDs

6ORL|1|2|U|1247
6ORL|1|2|A|1248
6ORL|1|2|C|1249
6ORL|1|2|A|1250
6ORL|1|2|A|1251
6ORL|1|2|A|1252
6ORL|1|2|G|1253
*
6ORL|1|2|C|1284
6ORL|1|2|A|1285
6ORL|1|2|U|1286
6ORL|1|2|A|1287
6ORL|1|2|A|1288
6ORL|1|2|A|1289
6ORL|1|2|G|1290

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9

Chain o

30S ribosomal protein S10