IL_6OSI_054

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CACG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_054 not in the Motif Atlas

Geometric match to IL_8CRE_469

Geometric discrepancy: 0.2217

The information below is about IL_8CRE_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11399.2

Basepair signature

cWW-cHW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

6OSI|1|QA|C|1407
6OSI|1|QA|A|1408
6OSI|1|QA|C|1409
6OSI|1|QA|G|1410
*
6OSI|1|QA|C|1490
6OSI|1|QA|G|1491
6OSI|1|QA|A|1492
6OSI|1|QA|A|1493
6OSI|1|QA|G|1494

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain RA

Large subunit ribosomal RNA; LSU rRNA