IL_6OSI_158

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

6OSI|1|RA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_158 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1345

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6OSI|1|RA|U|2636
6OSI|1|RA|U|2637
6OSI|1|RA|G|2638
6OSI|1|RA|A|2639
6OSI|1|RA|G|2640
*
6OSI|1|RA|C|2774
6OSI|1|RA|A|2775
6OSI|1|RA|A|2776
6OSI|1|RA|G|2777
6OSI|1|RA|A|2778
6OSI|1|RA|U|2779
6OSI|1|RA|G|2780
6OSI|1|RA|A|2781
6OSI|1|RA|G|2782

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RN

50S ribosomal protein L13