IL_6OSI_183

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6OSI|1|XA|U|244, 6OSI|1|XA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_183 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.131

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6OSI|1|XA|C|242
6OSI|1|XA|A|243
6OSI|1|XA|U|244
6OSI|1|XA|C|245
6OSI|1|XA|A|246
6OSI|1|XA|G|247
*
6OSI|1|XA|C|277
6OSI|1|XA|G|278
6OSI|1|XA|A|279
6OSI|1|XA|C|280
6OSI|1|XA|G|281
6OSI|1|XA|A|282
6OSI|1|XA|C|283
6OSI|1|XA|G|284

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17