IL_6OSI_293

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

6OSI|1|YA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_293 not in the Motif Atlas

Homologous match to IL_7RQB_067

Geometric discrepancy: 0.18

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

6OSI|1|YA|A|1669
6OSI|1|YA|C|1670
6OSI|1|YA|U|1671
6OSI|1|YA|C|1672
6OSI|1|YA|U|1673
6OSI|1|YA|G|1674
*
6OSI|1|YA|C|1990
6OSI|1|YA|U|1991
6OSI|1|YA|G|1992
6OSI|1|YA|U|1993

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YO

50S ribosomal protein L14