IL_6OSI_301

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_301 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1416

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6OSI|1|YA|G|1856
6OSI|1|YA|G|1857
6OSI|1|YA|G|1858
6OSI|1|YA|A|1859
6OSI|1|YA|G|1860
*
6OSI|1|YA|C|1882
6OSI|1|YA|G|1883
6OSI|1|YA|A|1884
6OSI|1|YA|A|1885
6OSI|1|YA|C|1886

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain Y1

50S ribosomal protein L28