IL_6OSI_311

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

6OSI|1|YA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_311 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.5368

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6OSI|1|YA|C|2129
6OSI|1|YA|U|2130
6OSI|1|YA|G|2131
6OSI|1|YA|U|2132
6OSI|1|YA|G|2133
6OSI|1|YA|A|2134
6OSI|1|YA|A|2135
6OSI|1|YA|C|2136
*
6OSI|1|YA|G|2155
6OSI|1|YA|G|2156
6OSI|1|YA|G|2157
6OSI|1|YA|A|2158
6OSI|1|YA|G|2159

Current chains

Chain YA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA