IL_6OSI_326

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_326 not in the Motif Atlas

Geometric match to IL_1UN6_004

Geometric discrepancy: 0.2736

The information below is about IL_1UN6_004

Detailed Annotation

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_24254.1

Basepair signature

cWW-cWW-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6OSI|1|YA|C|2652
6OSI|1|YA|U|2653
6OSI|1|YA|A|2654
6OSI|1|YA|G|2655
6OSI|1|YA|U|2656
6OSI|1|YA|A|2657
6OSI|1|YA|C|2658
*
6OSI|1|YA|G|2663
6OSI|1|YA|G|2664
6OSI|1|YA|A|2665
6OSI|1|YA|C|2666
6OSI|1|YA|C|2667
6OSI|1|YA|G|2668

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YH

50S ribosomal protein L6