IL_6OSI_328

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_328 not in the Motif Atlas

Homologous match to IL_9DFE_104

Geometric discrepancy: 0.1606

The information below is about IL_9DFE_104

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6OSI|1|YA|U|2687
6OSI|1|YA|U|2688
6OSI|1|YA|U|2689
6OSI|1|YA|C|2690
6OSI|1|YA|C|2691
*
6OSI|1|YA|G|2718
6OSI|1|YA|G|2719
6OSI|1|YA|U|2720
6OSI|1|YA|A|2721
6OSI|1|YA|G|2722

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YR

50S ribosomal protein L17

Chain YT

50S ribosomal protein L19