IL_6OSI_347

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CCAC*GUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_347 not in the Motif Atlas

Geometric match to IL_3TZR_003

Geometric discrepancy: 0.2358

The information below is about IL_3TZR_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6OSI|1|QA|C|1243
6OSI|1|QA|C|1244
6OSI|1|QA|A|1245
6OSI|1|QA|C|1246
*
6OSI|1|QA|G|1291
6OSI|1|QA|U|1292
6OSI|1|QA|G|1293
6OSI|1|QA|G|1294

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx