IL_6OSI_352

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_352 not in the Motif Atlas

Homologous match to IL_7A0S_109

Geometric discrepancy: 0.1466

The information below is about IL_7A0S_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6OSI|1|RA|G|1666
6OSI|1|RA|G|1667
6OSI|1|RA|A|1668
6OSI|1|RA|A|1669
6OSI|1|RA|C|1670
6OSI|1|RA|U|1671
6OSI|1|RA|C|1672
6OSI|1|RA|U|1673
6OSI|1|RA|G|1674
*
6OSI|1|RA|C|1990
6OSI|1|RA|U|1991
6OSI|1|RA|G|1992
6OSI|1|RA|U|1993
6OSI|1|RA|C|1994

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RO

50S ribosomal protein L14