IL_6OSI_373

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GGGGAG*CGAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_373 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.3685

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6OSI|1|YA|G|1855
6OSI|1|YA|G|1856
6OSI|1|YA|G|1857
6OSI|1|YA|G|1858
6OSI|1|YA|A|1859
6OSI|1|YA|G|1860
*
6OSI|1|YA|C|1882
6OSI|1|YA|G|1883
6OSI|1|YA|A|1884
6OSI|1|YA|A|1885
6OSI|1|YA|C|1886
6OSI|1|YA|C|1887

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain Y1

50S ribosomal protein L28