IL_6OSI_379

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

UGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_379 not in the Motif Atlas

Homologous match to IL_7A0S_107

Geometric discrepancy: 0.3172

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

6OSI|1|YB|U|80
6OSI|1|YB|G|81
6OSI|1|YB|G|82
*
6OSI|1|YB|C|94
6OSI|1|YB|U|95
6OSI|1|YB|G|96

Current chains

Chain YB

5S rRNA

Nearby chains

Chain Y3

50S ribosomal protein L30

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YQ

50S ribosomal protein L16

Chain YZ

50S ribosomal protein L25