IL_6OSK_015

3D structure

PDB id

6OSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated 70S complex at 60 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6OSK|1|1|G|801, 6OSK|1|1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSK_015 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1186

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6OSK|1|1|G|674
6OSK|1|1|A|675
6OSK|1|1|A|676
6OSK|1|1|A|677
6OSK|1|1|C|678
*
6OSK|1|1|G|799
6OSK|1|1|A|800
6OSK|1|1|G|801
6OSK|1|1|A|802
6OSK|1|1|U|803
6OSK|1|1|A|804
6OSK|1|1|G|805
6OSK|1|1|C|806

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain L

50S ribosomal protein L15