3D structure

PDB id
6OSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF1 accommodated 70S complex at 60 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
6OSK|1|1|G|801, 6OSK|1|1|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OSK_015 not in the Motif Atlas
Geometric match to IL_7RQB_018
Geometric discrepancy: 0.1186
The information below is about IL_7RQB_018
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_17470.6
Basepair signature
cWW-tWW-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

6OSK|1|1|G|674
6OSK|1|1|A|675
6OSK|1|1|A|676
6OSK|1|1|A|677
6OSK|1|1|C|678
*
6OSK|1|1|G|799
6OSK|1|1|A|800
6OSK|1|1|G|801
6OSK|1|1|A|802
6OSK|1|1|U|803
6OSK|1|1|A|804
6OSK|1|1|G|805
6OSK|1|1|C|806

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L4
Chain L
50S ribosomal protein L15

Coloring options:


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