IL_6OSK_043

3D structure

PDB id

6OSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated 70S complex at 60 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6OSK|1|1|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSK_043 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1134

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6OSK|1|1|C|1208
6OSK|1|1|U|1209
6OSK|1|1|G|1210
6OSK|1|1|C|1211
6OSK|1|1|G|1212
6OSK|1|1|A|1213
6OSK|1|1|A|1214
6OSK|1|1|G|1215
*
6OSK|1|1|U|1234
6OSK|1|1|G|1235
6OSK|1|1|G|1236
6OSK|1|1|A|1237
6OSK|1|1|G|1238

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20