IL_6OSK_051

3D structure

PDB id

6OSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated 70S complex at 60 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

6OSK|1|1|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSK_051 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1905

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6OSK|1|1|G|1432
6OSK|1|1|A|1433
6OSK|1|1|A|1434
6OSK|1|1|G|1435
*
6OSK|1|1|C|1557
6OSK|1|1|C|1558
6OSK|1|1|U|1559
6OSK|1|1|G|1560
6OSK|1|1|C|1561

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2