IL_6OSK_096

3D structure

PDB id

6OSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated 70S complex at 60 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSK_096 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.0998

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6OSK|1|1|C|2652
6OSK|1|1|U|2653
6OSK|1|1|A|2654
6OSK|1|1|G|2655
6OSK|1|1|U|2656
6OSK|1|1|A|2657
6OSK|1|1|C|2658
*
6OSK|1|1|G|2663
6OSK|1|1|G|2664
6OSK|1|1|A|2665
6OSK|1|1|C|2666
6OSK|1|1|C|2667
6OSK|1|1|G|2668

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain K

50S ribosomal protein L14