IL_6OSK_130

3D structure

PDB id

6OSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated 70S complex at 60 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSK_130 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.2106

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6OSK|1|2|G|450
6OSK|1|2|A|451
6OSK|1|2|A|452
6OSK|1|2|G|453
6OSK|1|2|G|454
6OSK|1|2|G|455
*
6OSK|1|2|C|477
6OSK|1|2|A|478
6OSK|1|2|U|479
6OSK|1|2|U|480
6OSK|1|2|G|481
6OSK|1|2|A|482
6OSK|1|2|C|483

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16