IL_6OSQ_017

3D structure

PDB id

6OSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated state bound Release complex 70S at long incubation time point

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAGG*CUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSQ_017 not in the Motif Atlas

Homologous match to IL_7A0S_018

Geometric discrepancy: 0.1543

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

6OSQ|1|1|U|703
6OSQ|1|1|G|704
6OSQ|1|1|A|705
6OSQ|1|1|A|706
6OSQ|1|1|G|707
6OSQ|1|1|G|708
*
6OSQ|1|1|C|723
6OSQ|1|1|U|724
6OSQ|1|1|G|725
6OSQ|1|1|G|726
6OSQ|1|1|A|727
6OSQ|1|1|G|728

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2