3D structure

PDB id
6OSQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF1 accommodated state bound Release complex 70S at long incubation time point
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GGAGUACG*UAAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OSQ_141 not in the Motif Atlas
Homologous match to IL_5J7L_038
Geometric discrepancy: 0.0899
The information below is about IL_5J7L_038
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

6OSQ|1|2|G|887
6OSQ|1|2|G|888
6OSQ|1|2|A|889
6OSQ|1|2|G|890
6OSQ|1|2|U|891
6OSQ|1|2|A|892
6OSQ|1|2|C|893
6OSQ|1|2|G|894
*
6OSQ|1|2|U|905
6OSQ|1|2|A|906
6OSQ|1|2|A|907
6OSQ|1|2|A|908
6OSQ|1|2|A|909
6OSQ|1|2|C|910

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain q
30S ribosomal protein S12

Coloring options:


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