IL_6OSQ_141

3D structure

PDB id

6OSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated state bound Release complex 70S at long incubation time point

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSQ_141 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0899

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6OSQ|1|2|G|887
6OSQ|1|2|G|888
6OSQ|1|2|A|889
6OSQ|1|2|G|890
6OSQ|1|2|U|891
6OSQ|1|2|A|892
6OSQ|1|2|C|893
6OSQ|1|2|G|894
*
6OSQ|1|2|U|905
6OSQ|1|2|A|906
6OSQ|1|2|A|907
6OSQ|1|2|A|908
6OSQ|1|2|A|909
6OSQ|1|2|C|910

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain q

30S ribosomal protein S12