IL_6OST_114

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAAAC*GUGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OST_114 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.2873

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6OST|1|2|G|128
6OST|1|2|A|129
6OST|1|2|A|130
6OST|1|2|A|131
6OST|1|2|C|132
*
6OST|1|2|G|230
6OST|1|2|U|231
6OST|1|2|G|232
6OST|1|2|C|233

Current chains

Chain 2

16S Ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain v

30S ribosomal protein S17

Chain y

30S ribosomal protein S20