6OST Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6OST_003 | 1/1/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_6OST_008 | 1/1/246:252 | No text annotation | homologous HL_7A0S_008 HL_76371.2 | |
| HL_6OST_011 | 1/1/327:335 | T-loop with unstacked turn | homologous HL_4WF9_012 HL_27670.3 | |
| HL_6OST_012 | 1/1/382:392 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_6OST_013 | 1/1/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_6OST_014 | 1/1/462:467 | GNRA | homologous HL_4WF9_015 HL_34789.2 | |
| HL_6OST_017 | 1/1/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 NA | |
| HL_6OST_019 | 1/1/629:634 | GNRA | homologous HL_5J7L_152 NA | |
| HL_6OST_022 | 1/1/744:753 | No text annotation | homologous HL_5J7L_155 NA | |
| HL_6OST_023 | 1/1/779:785 | No text annotation | homologous HL_7RQB_024 NA | |
| HL_6OST_024 | 1/1/826:831 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_6OST_107 | 1/1/955:962 | GNRA | homologous HL_5J7L_211 NA | |
| HL_6OST_027 | 1/1/978:985 | No text annotation | homologous HL_4WF9_028 HL_47171.1 | |
| HL_6OST_031 | 1/1/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_6OST_032 | 1/1/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.1 | |
| HL_6OST_033 | 1/1/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_6OST_034 | 1/1/1389:1398 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_6OST_035 | 1/1/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 NA | |
| HL_6OST_038 | 1/1/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_90436.2 | |
| HL_6OST_039 | 1/1/1612:1619 | No text annotation | homologous HL_5J7L_173 NA | |
| HL_6OST_040 | 1/1/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
| HL_6OST_041 | 1/1/1691:1696 | UNCG | homologous HL_4WF9_040 HL_61337.2 | |
| HL_6OST_044 | 1/1/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_6OST_045 | 1/1/1806:1811 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_6OST_047 | 1/1/1910:1920 | No text annotation | homologous HL_5J7L_181 NA | |
| HL_6OST_048 | 1/1/1949:1957 | No text annotation | homologous HL_7A0S_048 HL_61418.2 | |
| HL_6OST_049 | 1/1/2027:2036 | No text annotation | homologous HL_5J7L_183 NA | |
| HL_6OST_051 | 1/1/2209:2215 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_6OST_052 | 1/1/2248:2256 | No text annotation | homologous HL_4WF9_049 HL_11974.2 | |
| HL_6OST_053 | 1/1/2264:2276 | No text annotation | homologous HL_4WF9_050 HL_02042.1 | |
| HL_6OST_108 | 1/1/2304:2312 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_6OST_056 | 1/1/2356:2361 | GNRA | homologous HL_5J7L_190 NA | |
| HL_6OST_058 | 1/1/2404:2413 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_6OST_062 | 1/1/2594:2599 | GNRA | homologous HL_5J7L_196 NA | |
| HL_6OST_064 | 1/1/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_6OST_067 | 1/1/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_6OST_069 | 1/2/12:22 | No text annotation | homologous HL_4LFB_001 HL_73535.1 | |
| HL_6OST_074 | 1/2/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_6OST_076 | 1/2/320:333 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_6OST_078 | 1/2/379:384 | GNRA | homologous HL_4LFB_010 HL_34789.2 | |
| HL_6OST_079 | 1/2/419:424 | UNCG | homologous HL_4LFB_011 HL_61337.2 | |
| HL_6OST_109 | 1/2/522:527 | GNRA variation | homologous HL_4LFB_033 HL_34789.2 | |
| HL_6OST_083 | 1/2/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_6OST_084 | 1/2/726:731 | GNRA | homologous HL_4LFB_016 HL_34789.2 | |
| HL_6OST_085 | 1/2/786:796 | No text annotation | homologous HL_4LFB_017 HL_38491.2 | |
| HL_6OST_088 | 1/2/897:902 | GNRA | homologous HL_5J7L_020 NA | |
| HL_6OST_089 | 1/2/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_6OST_092 | 1/2/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
| HL_6OST_098 | 1/2/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_6OST_110 | 1/3/34:48 | No text annotation | homologous HL_5J7L_215 NA | |
| HL_6OST_101 | 1/3/38:44 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_6OST_102 | 1/3/86:90 | Mini UNCG | homologous HL_5J7L_204 NA | |
| HL_6OST_104 | 1/5/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6OST_001 | No text annotation | ||
| HL_6OST_002 | No text annotation | ||
| HL_6OST_004 | UNCG | ||
| HL_6OST_005 | No text annotation | ||
| HL_6OST_006 | No text annotation | ||
| HL_6OST_007 | No text annotation | ||
| HL_6OST_009 | T-loop with 2 stacked bulged bases | ||
| HL_6OST_010 | No text annotation | ||
| HL_6OST_015 | GNRA | ||
| HL_6OST_016 | No text annotation | ||
| HL_6OST_018 | No text annotation | ||
| HL_6OST_020 | No text annotation | ||
| HL_6OST_021 | No text annotation | ||
| HL_6OST_106 | GNRA wlth tandem sheared | ||
| HL_6OST_025 | No text annotation | ||
| HL_6OST_026 | No text annotation | ||
| HL_6OST_028 | GNRA wlth tandem sheared | ||
| HL_6OST_029 | No text annotation | ||
| HL_6OST_030 | GNRA | ||
| HL_6OST_036 | Pseudoknot geometry with 3' bulge | ||
| HL_6OST_037 | UNCG | ||
| HL_6OST_042 | No text annotation | ||
| HL_6OST_043 | No text annotation | ||
| HL_6OST_046 | GNRA variation | ||
| HL_6OST_050 | No text annotation | ||
| HL_6OST_054 | No text annotation | ||
| HL_6OST_055 | Pseudoknot geometry | ||
| HL_6OST_057 | GNRA | ||
| HL_6OST_059 | No text annotation | ||
| HL_6OST_060 | GNRA variation | ||
| HL_6OST_061 | No text annotation | ||
| HL_6OST_063 | GNRA | ||
| HL_6OST_065 | No text annotation | ||
| HL_6OST_066 | UNCG variation | ||
| HL_6OST_068 | GNRA | ||
| HL_6OST_070 | No text annotation | ||
| HL_6OST_071 | GNRA | ||
| HL_6OST_072 | GNRA | ||
| HL_6OST_073 | No text annotation | ||
| HL_6OST_075 | GNRA | ||
| HL_6OST_077 | UNCG | ||
| HL_6OST_080 | No text annotation | ||
| HL_6OST_081 | No text annotation | ||
| HL_6OST_082 | GNRA-like with tWH | ||
| HL_6OST_086 | No text annotation | ||
| HL_6OST_087 | GNRA | ||
| HL_6OST_090 | No text annotation | ||
| HL_6OST_111 | GNRA | ||
| HL_6OST_091 | No text annotation | ||
| HL_6OST_093 | T-loop related | ||
| HL_6OST_094 | No text annotation | ||
| HL_6OST_095 | GNRA | ||
| HL_6OST_096 | GNRA | ||
| HL_6OST_097 | T-loop with 3 stacked bulged bases | ||
| HL_6OST_099 | UNCG | ||
| HL_6OST_100 | GNRA | ||
| HL_6OST_103 | No text annotation | ||
| HL_6OST_105 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6OST_002 | 1/1/36:37, 1/1/442:444 | Single bulged A | homologous IL_5J7L_246 NA | |
| IL_6OST_004 | 1/1/81:85, 1/1/97:105 | No text annotation | homologous IL_5J7L_248 NA | |
| IL_6OST_005 | 1/1/183:184, 1/1/212:214 | Single stack bend | homologous IL_5J7L_249 NA | |
| IL_6OST_007 | 1/1/239:245, 1/1/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_6OST_008 | 1/1/269:271, 1/1/366:370 | No text annotation | homologous IL_5J7L_252 NA | |
| IL_6OST_011 | 1/1/481:484, 1/1/496:509 | No text annotation | homologous IL_5J7L_255 NA | |
| IL_6OST_013 | 1/1/564:566, 1/1/575:577 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 NA | |
| IL_6OST_015 | 1/1/672:674, 1/1/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 NA | |
| IL_6OST_016 | 1/1/674:678, 1/1/799:806 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_6OST_017 | 1/1/697:698, 1/1/763:765 | Single bulged A | homologous IL_5J7L_261 NA | |
| IL_6OST_018 | 1/1/702:703, 1/1/728:730 | Single bulged G | homologous IL_5J7L_262 NA | |
| IL_6OST_021 | 1/1/775:777, 1/1/787:791 | Multiple bulged bases | homologous IL_5J7L_265 NA | |
| IL_6OST_022 | 1/1/837:838, 1/1/940:942 | Single stack bend | homologous IL_4WF9_028 IL_15011.2 | |
| IL_6OST_029 | 1/1/870:872, 1/1/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 NA | |
| IL_6OST_030 | 1/1/994:996, 1/1/1159:1160 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_6OST_031 | 1/1/998:1002, 1/1/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_6OST_032 | 1/1/1004:1011, 1/1/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_6OST_035 | 1/1/1024:1030, 1/1/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_6OST_036 | 1/1/1031:1034, 1/1/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_6OST_041 | 1/1/1196:1198, 1/1/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 NA | |
| IL_6OST_042 | 1/1/1202:1206, 1/1/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_6OST_043 | 1/1/1208:1215, 1/1/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6OST_044 | 1/1/1262:1269, 1/1/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_6OST_046 | 1/1/1319:1323, 1/1/1331:1333 | C-loop | homologous IL_5J7L_291 NA | |
| IL_6OST_047 | 1/1/1351:1355, 1/1/1376:1380 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_6OST_051 | 1/1/1432:1435, 1/1/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_6OST_052 | 1/1/1437:1440, 1/1/1551:1555 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_6OST_055 | 1/1/1474:1479, 1/1/1512:1517 | No text annotation | geometric IL_8ZA4_003 IL_35186.2 | |
| IL_6OST_057 | 1/1/1489:1491, 1/1/1499:1500 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_6OST_059 | 1/1/1651:1656, 1/1/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_6OST_060 | 1/1/1663:1665, 1/1/1995:1997 | Isolated tWW turn | geometric IL_4WF9_063 IL_10432.1 | |
| IL_6OST_179 | 1/1/1666:1669, 1/1/1993:1994 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_6OST_180 | 1/1/1666:1674, 1/1/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_6OST_062 | 1/1/1669:1674, 1/1/1990:1993 | Intercalated tWH | geometric IL_4WF9_065 IL_28217.1 | |
| IL_6OST_063 | 1/1/1686:1691, 1/1/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 NA | |
| IL_6OST_066 | 1/1/1770:1771, 1/1/1980:1982 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_6OST_067 | 1/1/1798:1804, 1/1/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_6OST_181 | 1/1/1851:1860, 1/1/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_6OST_072 | 1/1/1933:1934, 1/1/1964:1967 | Bulged stacked bases | homologous IL_5J7L_318 NA | |
| IL_6OST_073 | 1/1/1934:1945, 1/1/1961:1964 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_6OST_074 | 1/1/2050:2052, 1/1/2617:2618 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_6OST_075 | 1/1/2054:2056, 1/1/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_6OST_183 | 1/1/2067:2069, 1/1/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_97561.2 | |
| IL_6OST_078 | 1/1/2070:2071, 1/1/2438:2441 | Minor groove platform | geometric IL_7A0S_076 IL_34520.2 | |
| IL_6OST_079 | 1/1/2081:2083, 1/1/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_6OST_086 | 1/1/2453:2455, 1/1/2496:2500 | No text annotation | homologous IL_5J7L_335 NA | |
| IL_6OST_187 | 1/1/2453:2456, 1/1/2495:2500 | No text annotation | ||
| IL_6OST_088 | 1/1/2459:2461, 1/1/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 NA | |
| IL_6OST_089 | 1/1/2466:2470, 1/1/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_6OST_091 | 1/1/2510:2512, 1/1/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_4WF9_095 IL_68118.2 | |
| IL_6OST_092 | 1/1/2512:2513, 1/1/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_6OST_095 | 1/1/2591:2592, 1/1/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_6OST_096 | 1/1/2636:2640, 1/1/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_6OST_097 | 1/1/2652:2658, 1/1/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 NA | |
| IL_6OST_098 | 1/1/2680:2684, 1/1/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_6OST_100 | 1/1/2695:2696, 1/1/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_6OST_102 | 1/1/2806:2811, 1/1/2889:2892 | No text annotation | homologous IL_5J7L_351 NA | |
| IL_6OST_104 | 1/1/2843:2846, 1/1/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_6OST_106 | 1/2/30:32, 1/2/552:553 | Single bulged G | homologous IL_5J7L_001 NA | |
| IL_6OST_107 | 1/2/44:45, 1/2/396:398 | Single bulged A | homologous IL_4LFB_002 IL_14190.2 | |
| IL_6OST_108 | 1/2/47:52, 1/2/359:361 | No text annotation | geometric IL_5J7L_003 NA | |
| IL_6OST_110 | 1/2/63:66, 1/2/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.2 | |
| IL_6OST_115 | 1/2/132:136, 1/2/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.2 | |
| IL_6OST_118 | 1/2/242:247, 1/2/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_6OST_119 | 1/2/249:252, 1/2/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_6OST_120 | 1/2/292:293, 1/2/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_6OST_121 | 1/2/367:369, 1/2/392:393 | Single bulged U | geometric IL_5J7L_017 NA | |
| IL_6OST_122 | 1/2/371:375, 1/2/389:390 | C-loop | homologous IL_6CZR_127 NA | |
| IL_6OST_123 | 1/2/375:376, 1/2/387:389 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_6OST_129 | 1/2/515:521, 1/2/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6OST_130 | 1/2/569:575, 1/2/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_6OST_131 | 1/2/580:584, 1/2/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_6OST_132 | 1/2/594:596, 1/2/644:645 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_6OST_137 | 1/2/662:666, 1/2/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_6OST_192 | 1/2/673:677, 1/2/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.2 | |
| IL_6OST_140 | 1/2/774:778, 1/2/804:805 | Left turn | homologous IL_5J7L_036 NA | |
| IL_6OST_142 | 1/2/887:894, 1/2/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_6OST_143 | 1/2/922:923, 1/2/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_14190.2 | |
| IL_6OST_149 | 1/2/1048:1050, 1/2/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_97561.2 | |
| IL_6OST_152 | 1/2/1057:1058, 1/2/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_6OST_153 | 1/2/1060:1061, 1/2/1195:1197 | Single bulged A | homologous IL_5J7L_049 NA | |
| IL_6OST_159 | 1/2/1255:1258, 1/2/1277:1282 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_6OST_165 | 1/2/1412:1414, 1/2/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_6OST_195 | 1/2/1430:1435, 1/2/1466:1470 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_6OST_174 | 1/3/71:79, 1/3/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6OST_001 | Triple sheared with non-canonical cWW | ||
| IL_6OST_003 | Minor groove platform | ||
| IL_6OST_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6OST_009 | No text annotation | ||
| IL_6OST_010 | No text annotation | ||
| IL_6OST_012 | Double sheared | ||
| IL_6OST_014 | AAA cross-strand stack | ||
| IL_6OST_019 | Triple sheared | ||
| IL_6OST_020 | Major groove platform | ||
| IL_6OST_023 | 90 degree turn | ||
| IL_6OST_175 | No text annotation | ||
| IL_6OST_024 | Stack outside cWW | ||
| IL_6OST_025 | No text annotation | ||
| IL_6OST_197 | Single stack bend | ||
| IL_6OST_026 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6OST_027 | Single bulged G | ||
| IL_6OST_028 | C-loop with bulged stacked A's | ||
| IL_6OST_033 | Single bulged U | ||
| IL_6OST_034 | Kink-turn related | ||
| IL_6OST_176 | Partly complementary | ||
| IL_6OST_037 | No text annotation | ||
| IL_6OST_038 | Kink-turn | ||
| IL_6OST_039 | No text annotation | ||
| IL_6OST_177 | No text annotation | ||
| IL_6OST_040 | No text annotation | ||
| IL_6OST_045 | Major groove platform; stack outside cWW | ||
| IL_6OST_048 | tSH-tHW-tHS | ||
| IL_6OST_049 | No text annotation | ||
| IL_6OST_178 | No text annotation | ||
| IL_6OST_050 | UAA/GAN | ||
| IL_6OST_053 | No text annotation | ||
| IL_6OST_198 | Single bulged U | ||
| IL_6OST_054 | No text annotation | ||
| IL_6OST_056 | No text annotation | ||
| IL_6OST_058 | UAA/GAN variation | ||
| IL_6OST_061 | No text annotation | ||
| IL_6OST_064 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6OST_065 | Triple sheared | ||
| IL_6OST_068 | Minor groove platform, major groove intercalation | ||
| IL_6OST_069 | Major groove intercalation | ||
| IL_6OST_070 | Major groove minor groove platform; mini C-loop | ||
| IL_6OST_071 | UAA/GAN related | ||
| IL_6OST_182 | No text annotation | ||
| IL_6OST_076 | No text annotation | ||
| IL_6OST_077 | No text annotation | ||
| IL_6OST_080 | Isolated non-canonical cWW pair | ||
| IL_6OST_081 | No text annotation | ||
| IL_6OST_184 | No text annotation | ||
| IL_6OST_199 | Other IL | ||
| IL_6OST_185 | No text annotation | ||
| IL_6OST_186 | No text annotation | ||
| IL_6OST_082 | No text annotation | ||
| IL_6OST_083 | Single bulged U | ||
| IL_6OST_084 | Double sheared | ||
| IL_6OST_085 | No text annotation | ||
| IL_6OST_087 | No text annotation | ||
| IL_6OST_188 | Major groove platform | ||
| IL_6OST_189 | Major groove platform | ||
| IL_6OST_090 | No text annotation | ||
| IL_6OST_093 | Major groove platform with intercalation | ||
| IL_6OST_094 | No text annotation | ||
| IL_6OST_099 | UAA/GAN related, with intercalation | ||
| IL_6OST_101 | UAA/GAN with extra cWW | ||
| IL_6OST_103 | Major groove intercalation | ||
| IL_6OST_105 | tHS double platform | ||
| IL_6OST_109 | Minor groove platform | ||
| IL_6OST_190 | Isolated non-canonical cWW pair | ||
| IL_6OST_111 | Minor groove platform with extra cWW | ||
| IL_6OST_200 | Minor groove platform | ||
| IL_6OST_112 | No text annotation | ||
| IL_6OST_113 | Single bulged G | ||
| IL_6OST_191 | Isolated non-canonical cWW pair | ||
| IL_6OST_114 | Tandem non-canonical cWW pairs | ||
| IL_6OST_116 | Isolated cWH basepair | ||
| IL_6OST_117 | tWH-tWH-tHW-tHW | ||
| IL_6OST_124 | No text annotation | ||
| IL_6OST_125 | No text annotation | ||
| IL_6OST_126 | tSH-tHW-tWW | ||
| IL_6OST_127 | No text annotation | ||
| IL_6OST_128 | SSU/LSU pseudoknot | ||
| IL_6OST_133 | Major groove minor groove platform; mini C-loop | ||
| IL_6OST_134 | No text annotation | ||
| IL_6OST_135 | Major groove platform; stack outside cWW | ||
| IL_6OST_136 | No text annotation | ||
| IL_6OST_201 | Single stack bend | ||
| IL_6OST_138 | No text annotation | ||
| IL_6OST_139 | Kink-turn | ||
| IL_6OST_141 | tSH-tHW-tHS | ||
| IL_6OST_144 | Single bulged G | ||
| IL_6OST_145 | Minor groove platform | ||
| IL_6OST_146 | No text annotation | ||
| IL_6OST_147 | Minor groove platform | ||
| IL_6OST_148 | Single stack bend | ||
| IL_6OST_150 | No text annotation | ||
| IL_6OST_151 | Isolated cWS basepair | ||
| IL_6OST_154 | Isolated non-canonical cWW pair | ||
| IL_6OST_155 | No text annotation | ||
| IL_6OST_156 | Minor groove platform | ||
| IL_6OST_157 | No text annotation | ||
| IL_6OST_158 | No text annotation | ||
| IL_6OST_160 | Double sheared with non-canonical cWW | ||
| IL_6OST_161 | No text annotation | ||
| IL_6OST_162 | No text annotation | ||
| IL_6OST_163 | No text annotation | ||
| IL_6OST_193 | Isolated non-canonical cWW pair | ||
| IL_6OST_164 | No text annotation | ||
| IL_6OST_194 | Decoding loop related | ||
| IL_6OST_166 | Double sheared | ||
| IL_6OST_167 | No text annotation | ||
| IL_6OST_168 | No text annotation | ||
| IL_6OST_169 | No text annotation | ||
| IL_6OST_170 | Major groove intercalation | ||
| IL_6OST_171 | No text annotation | ||
| IL_6OST_172 | No text annotation | ||
| IL_6OST_196 | No text annotation | ||
| IL_6OST_202 | No text annotation | ||
| IL_6OST_173 | Symmetric double minor groove platform |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6OST_001 | 1/1/30:31, 1/1/474:481, 1/1/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6OST_026 | 1/1/30:31, 1/1/474:484, 1/1/496:510 | No text annotation | homologous J3_5J7L_066 NA | |
| J3_6OST_027 | 1/1/32:35, 1/1/445:461, 1/1/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_6OST_002 | 1/1/56:57, 1/1/70:76, 1/1/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_6OST_003 | 1/1/683:689, 1/1/773:775, 1/1/791:794 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_6OST_004 | 1/1/698:700, 1/1/732:736, 1/1/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6OST_005 | 1/1/1298:1303, 1/1/1625:1627, 1/1/1639:1642 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_6OST_006 | 1/1/1306:1309, 1/1/1605:1611, 1/1/1620:1622 | No text annotation | homologous J3_5J7L_042 NA | |
| J3_6OST_036 | 1/1/1344:1349, 1/1/1382:1385, 1/1/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_6OST_029 | 1/1/1424:1429, 1/1/1564:1565, 1/1/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_6OST_008 | 1/1/2282:2285, 1/1/2383:2395, 1/1/2421:2427 | No text annotation | homologous J3_4WF9_019 J3_39320.1 | |
| J3_6OST_009 | 1/1/2295:2299, 1/1/2317:2323, 1/1/2332:2337 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_6OST_010 | 1/1/2517:2520, 1/1/2545:2547, 1/1/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_6OST_012 | 1/1/2812:2815, 1/1/2831:2836, 1/1/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J3_6OST_031 | 1/2/46:52, 1/2/359:367, 1/2/393:395 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_6OST_015 | 1/2/672:673, 1/2/717:725, 1/2/732:734 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_6OST_016 | 1/2/826:829, 1/2/857:861, 1/2/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_6OST_017 | 1/2/936:939, 1/2/1344:1350, 1/2/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_6OST_018 | 1/2/943:946, 1/2/1235:1237, 1/2/1337:1340 | No text annotation | homologous J3_5J7L_005 NA | |
| J3_6OST_019 | 1/2/955:962, 1/2/973:984, 1/2/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_6OST_021 | 1/2/1063:1068, 1/2/1107:1113, 1/2/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_6OST_024 | 1/2/1237:1241, 1/2/1296:1303, 1/2/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J4_6OST_001 | 1/1/268:269, 1/1/370:375, 1/1/399:406, 1/1/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_6OST_003 | 1/1/601:604, 1/1/624:628, 1/1/635:638, 1/1/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_6OST_004 | 1/1/1270:1276, 1/1/1294:1295, 1/1/1645:1648, 1/1/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_6OST_005 | 1/1/1310:1314, 1/1/1338:1343, 1/1/1404:1405, 1/1/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_6OST_006 | 1/1/1313:1314, 1/1/1338:1343, 1/1/1404:1405, 1/1/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_6OST_008 | 1/1/1772:1776, 1/1/1788:1792, 1/1/1827:1830, 1/1/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_6OST_009 | 1/1/1833:1835, 1/1/1905:1906, 1/1/1924:1933, 1/1/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_6OST_011 | 1/1/2643:2646, 1/1/2674:2676, 1/1/2731:2735, 1/1/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J4_6OST_014 | 1/2/575:577, 1/2/764:769, 1/2/810:821, 1/2/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J5_6OST_001 | 1/1/47:54, 1/1/116:121, 1/1/130:131, 1/1/148:150, 1/1/176:178 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_6OST_002 | 1/1/531:533, 1/1/560:564, 1/1/577:579, 1/1/1261:1262, 1/1/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_6OST_003 | 1/1/584:589, 1/1/668:671, 1/1/809:812, 1/1/1195:1196, 1/1/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_6OST_004 | 1/1/1674:1682, 1/1/1706:1707, 1/1/1751:1752, 1/1/1756:1764, 1/1/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_6OST_005 | 1/1/2057:2064, 1/1/2446:2453, 1/1/2500:2507, 1/1/2582:2588, 1/1/2606:2611 | No text annotation | ||
| J5_6OST_006 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2282, 1/1/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J5_6OST_007 | 1/2/36:39, 1/2/403:406, 1/2/436:440, 1/2/497:500, 1/2/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_6OST_008 | 1/2/36:39, 1/2/403:406, 1/2/436:442, 1/2/492:500, 1/2/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_6OST_009 | 1/2/58:61, 1/2/106:113, 1/2/314:316, 1/2/337:339, 1/2/350:354 | No text annotation | homologous J5_5J7L_003 NA | |
| J6_6OST_001 | 1/1/45:46, 1/1/179:183, 1/1/214:224, 1/1/231:235, 1/1/262:266, 1/1/426:433 | No text annotation | ||
| J6_6OST_002 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2285, 1/1/2383:2395, 1/1/2421:2435 | No text annotation | ||
| J7_6OST_001 | 1/1/8:15, 1/1/525:531, 1/1/2018:2023, 1/1/2040:2043, 1/1/2625:2630, 1/1/2788:2789, 1/1/2894:2895 | No text annotation | ||
| J7_6OST_002 | 1/1/817:822, 1/1/835:837, 1/1/942:946, 1/1/971:976, 1/1/987:991, 1/1/1163:1164, 1/1/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6OST_028 | No text annotation | ||
| J3_6OST_030 | Kink-turn 3-way junction | ||
| J3_6OST_007 | No text annotation | ||
| J3_6OST_011 | No text annotation | ||
| J3_6OST_013 | No text annotation | ||
| J3_6OST_014 | No text annotation | ||
| J3_6OST_032 | No text annotation | ||
| J3_6OST_020 | No text annotation | ||
| J3_6OST_033 | No text annotation | ||
| J3_6OST_034 | No text annotation | ||
| J3_6OST_022 | No text annotation | ||
| J3_6OST_023 | No text annotation | ||
| J3_6OST_035 | No text annotation | ||
| J3_6OST_025 | No text annotation | ||
| J4_6OST_002 | No text annotation | ||
| J4_6OST_007 | No text annotation | ||
| J4_6OST_010 | No text annotation | ||
| J4_6OST_012 | No text annotation | ||
| J4_6OST_013 | No text annotation | ||
| J4_6OST_015 | tRNA junction |
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