IL_6OST_126

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

6OST|1|2|U|485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OST_126 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1778

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6OST|1|2|G|446
6OST|1|2|G|447
6OST|1|2|A|448
6OST|1|2|G|449
6OST|1|2|G|450
*
6OST|1|2|C|483
6OST|1|2|G|484
6OST|1|2|U|485
6OST|1|2|U|486
6OST|1|2|A|487
6OST|1|2|C|488

Current chains

Chain 2

16S Ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain u

30S ribosomal protein S16