IL_6OST_160

3D structure

PDB id

6OST (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 pre-accommodated state bound Release complex 70S at 24ms

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OST_160 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.1941

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6OST|1|2|C|1259
6OST|1|2|G|1260
6OST|1|2|A|1261
6OST|1|2|C|1262
6OST|1|2|C|1263
*
6OST|1|2|G|1272
6OST|1|2|C|1273
6OST|1|2|A|1274
6OST|1|2|A|1275
6OST|1|2|G|1276

Current chains

Chain 2

16S Ribosomal RNA

Nearby chains

Chain s

30S ribosomal protein S14

Chain x

30S ribosomal protein S19