3D structure

PDB id
6OT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF2 accommodated state bound Release complex 70S at 24 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
6OT3|1|2|U|244, 6OT3|1|2|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OT3_118 not in the Motif Atlas
Homologous match to IL_5J7L_014
Geometric discrepancy: 0.134
The information below is about IL_5J7L_014
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

6OT3|1|2|G|242
6OT3|1|2|A|243
6OT3|1|2|U|244
6OT3|1|2|U|245
6OT3|1|2|A|246
6OT3|1|2|G|247
*
6OT3|1|2|C|277
6OT3|1|2|G|278
6OT3|1|2|A|279
6OT3|1|2|C|280
6OT3|1|2|G|281
6OT3|1|2|A|282
6OT3|1|2|U|283
6OT3|1|2|C|284

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain q
30S ribosomal protein S12
Chain v
30S ribosomal protein S17

Coloring options:


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